In addition to web-based tools, BrainMaps has several powerful
desktop applications for working with BrainMaps data.
It's like Google Earth for the Brain. StackVis
is an OpenGL-based desktop application for Windows and Linux (with
Wine) that shows sections from BrainMaps.org as stacks in 3D (for 3D brain
A powerful program that allows users to grab high-resolution image
data from the BrainMaps server and apply image analysis and image
An interactive 3D program that is integrated with BrainMaps.org. It
presents 2D image data within a 3D framework and fetches
high-resolution image data from the BrainMaps.org server.
Allows for 3D interactive visualization of brain
connectivity (i.e., 3D
interactive network visualization).