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Publications


NeuroImage Virtual Microscopy Brain Maps Publication
Peer-Reviewed Publications

Jones, E.G., Stone, J.M. and Karten, H.J. (2011), High-resolution digital brain atlases: a Hubble telescope for the brain. Annals of the New York Academy of Sciences, 1225: E147-E159. doi: 10.1111/j. 1749-6632.2011.06009.x

Mikula S, Parrish SK, Trimmer JS, Jones EG. Complete 3D visualization of primate striosomes by KChIP1 immunostaining. J Comp Neurol. 2009 Mar 20;514(5):507-517.

Mikula, S., Manger, P.R., and Jones, E.G. 2008. The Thalamus of the Monotremes: Cyto- and Myeloarchitecture and Chemical Neuroanatomy. Philos Trans R Soc Lond B Biol Sci. 363(1502):2415-40

Mikula, S., Stone, J.M., and Jones, E.G. 2008. BrainMaps.org - Interactive High-Resolution Digital Brain Atlases and Virtual Microscopy. Brains, Minds & Media, Vol.3, bmm1426, in: Lorenz S, Egelhaaf M (eds): Interactive Educational Media for the Neural and Cognitive Sciences, Brains, Minds & Media, 2008.

Trotts, I., Mikula, S., and Jones, E.G. 2007. Interactive Visualization of Multiresolution Image Stacks in 3D. NeuroImage. 35(3):1038-43.

Mikula, S., Trotts, I., Stone, J., and Jones, E.G. 2007. Internet-Enabled High-Resolution Brain Mapping and Virtual Microscopy. NeuroImage. 35(1):9-15


Conference Proceedings

S. Mikula, A. Graziano, J.M. Stone, E.G. Jones. Towards a Data-Driven Three-Dimensional Atlas of Mesoscale Neural Connectivity in the Macaque Brain. BioImage Informatics. (Janelia Farm, VA), 2009.

S. Mikula, X-B Liu, J. Stone, E.G. Jones. Multiresolution Methods for Working with Massive Digital Electron Micrographs. Neural Circuit Reconstruction. (Janelia Farm, VA), 2007.

S. Mikula, J. Stone, E.G. Jones. Internet-Enabled Multiresolution Brain Mapping. Cajal Club Meeting. (Queretaro, Mexico), 2007.

S. Mikula, J.S. Trimmer, E.G. Jones. Three-Dimensional Organization of the Striosomes in Macaque. Soc. Neurosci. Abst. (San Diego, CA), 2007.

S. Mikula, I. Trotts, J. Stone, E.G. Jones. Internet-Enabled High-Resolution Brain Mapping and Virtual Microscopy. Soc. Neurosci. Abst. (Atlanta, GA), 2006.

S. Mikula, J. Stone, F. Gorin, I. Trotts, R. Linehan, S. Wei, E.G. Jones. The Digital Primate Brain Atlas: Issues and Solutions. Soc. Neurosci. Abst. (Washington D.C.), 2005.


Peer-Reviewed Publications That Use BrainMaps.org Data      [ Citing BrainMaps.org ]

Basso MA, Liu P. Context-dependent effects of substantia nigra stimulation on eye movements. J Neurophysiol. 2007; 97(6):4129-42.

Murray KD, Choudary PV, Jones EG. Nucleus- and cell-specific gene expression in monkey thalamus. Proc Natl Acad Sci U S A. 2007; 104(6):1989-94.

Gardner EP, Ro JY, Babu KS, Ghosh S. Neurophysiology of prehension. II. Response diversity in primary somatosensory (S-I) and motor (M-I) cortices. J Neurophysiol. 2007; 97(2):1656-70.

Gardner EP, Babu KS, Reitzen SD, Ghosh S, Brown AS, Chen J, Hall AL, Herzlinger MD, Kohlenstein JB, Ro JY. Neurophysiology of prehension. I. Posterior parietal cortex and object-oriented hand behaviors. J Neurophysiol. 2007;97(1):387-406.

L. da Fontoura Costa, E. Bollt. A Fast and Accurate Nonlinear Spectral Method for Image Recognition and Registration. 2006. LANL arXiv


BrainMaps.org In The News

IMAGES: Scoping Out the Brain. Science 24 March 2006 311: 1685 [DOI: 10.1126/science.311.5768.1685e] (in NetWatch)

Animal Brain Maps Online. BirdTalk Jun 2007 25(6): p13.


Invited Talks

S. Mikula. Virtual Microscopy in Neurology. Aperio Visions Conference. (San Diego, CA), Oct, 2006.


Press Releases

Brain Maps Online - UC Davis News & Information - Mar 1, 2007

Brain Maps Online - UC Davis Egghead - Feb 27, 2007




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